DatasetSet_01_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls
#ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls
#ATM_minus_versus_ATM_plus_repos
Phenotypephenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in classATM_plus
GeneSetNCI_TNF RECEPTOR SIGNALING PATHWAY
Enrichment Score (ES)-0.45450673
Normalized Enrichment Score (NES)-1.88315
Nominal p-value0.0
FDR q-value0.023718026
FWER p-Value0.226
Table: GSEA Results Summary



Fig 1: Enrichment plot: NCI_TNF RECEPTOR SIGNALING PATHWAY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1CYCS1422484_at 1445484_at109.4420.0196No
2CEBPB1418901_at 1427844_a_at987.6200.0318No
3FGR1419526_at 1442804_at2045.9190.0396No
4MYC1424942_a_at3025.1620.0461No
5LMNB11423520_at 1423521_at3415.0130.0550No
6LMNB21451849_a_at3984.7580.0626No
7FYN1417558_at 1441647_at 1448765_at5194.2860.0662No
8CDK41422441_x_at5444.1920.0740No
9BLK1422775_at6103.9960.0795No
10BAX1416837_at9413.2740.0712No
11ASAH11416735_at10443.1060.0732No
12XPO11418442_at 1418443_at 1448070_at11512.9560.0746No
13ATF11417296_at14832.6110.0649No
14MALT11445068_at 1456126_at 1456429_at14902.6040.0701No
15LRDD1421397_a_at16392.4390.0685No
16MAPKAPK21426648_at16682.4130.0723No
17ELK41422233_at 1427162_a_at 1447571_at 1450549_s_at16942.3930.0763No
18KPNB11416925_at 1434357_a_at 1448526_at 1451967_x_at17332.3570.0795No
19BID1417045_at 1447873_x_at 1448560_at19502.1820.0742No
20MAF1435828_at 1437473_at 1444073_at 1447849_s_at 1447945_at 1456060_at19702.1700.0780No
21PPARG1420715_a_at20382.1180.0794No
22IL2RA1420691_at 1420692_at20872.0830.0816No
23TCF31436207_at 1450117_at21242.0600.0843No
24DFFB1421229_at 1437051_at23171.9410.0796No
25FOSL11417487_at 1417488_at23331.9330.0830No
26RIPK11419508_at 1439273_at 1449485_at25121.8300.0787No
27E2F11417878_at 1431875_a_at 1447840_x_at25421.8160.0813No
28SLC3A21425364_a_at29141.6760.0677No
29SMPD31422779_at 1438665_at 1445759_at 1450748_at29531.6630.0695No
30TP531426538_a_at 1427739_a_at 1438808_at 1457623_x_at 1459780_at 1459781_x_at30611.6190.0680No
31RPS6KA41438243_at 1448498_at31781.5760.0660No
32IGF11419519_at 1436497_at 1437401_at 1452014_a_at32991.5400.0638No
33PRKCI1417410_s_at 1448695_at34081.5060.0620No
34MAP3K141422999_at 1434364_at34341.4990.0640No
35CRADD1427505_a_at 1443430_at34471.4950.0667No
36YWHAG1420816_at 1420817_at 1450012_x_at 1459693_x_at34891.4770.0679No
37MEF2A1421252_a_at 1425426_a_at 1427185_at 1427186_a_at 1452347_at37641.3900.0582No
38CASP31426165_a_at 1430192_at 1449839_at39701.3410.0516No
39PARP11422502_at 1422503_s_at 1435368_a_at 1443573_at41701.2930.0452No
40CALM31426710_at 1438825_at 1438826_x_at 1450864_at43581.2570.0393No
41EGR41449977_at44611.2370.0372No
42RNF1281418318_at 1449036_at45171.2280.0373No
43MAP3K7IP11426898_at 1447692_x_at45241.2280.0396No
44TRAF11423602_at 1445452_at46041.2130.0386No
45MKNK11417630_at 1417631_at 1454119_at46461.2020.0392No
46SQSTM11440076_at 1442237_at 1444021_at 1450957_a_at48681.1590.0315No
47VIM1438118_x_at 1450641_at 1456292_a_at48801.1560.0335No
48CALM21422414_a_at 1423807_a_at51361.1100.0241No
49YWHAB1420878_a_at 1420879_a_at 1420880_a_at 1436783_x_at 1438708_x_at 1455815_a_at52281.0940.0222No
50PRKRA1447737_at 1448923_at52361.0930.0242No
51USF11426164_a_at 1448805_at 1459758_at52691.0870.0250No
52MAP3K71419988_at 1425795_a_at 1426627_at 1449693_at 1455441_at 1458787_at53181.0780.0251No
53IFNG1425947_at53631.0700.0254No
54AKT11416657_at 1425711_a_at 1440950_at 1442759_at55181.0470.0205No
55PRKG11443663_at 1443811_at 1443812_x_at 1444232_at 1445807_at 1445998_at 1449876_at57721.0130.0110No
56DUSP81418714_at58041.0090.0117No
57EIF4EBP11417562_at 1417563_at 1434976_x_at58281.0060.0128No
58RAN1443131_at 1446819_at 1447478_at 1460551_at58421.0040.0143No
59UBE2D31423112_at 1423113_a_at 1423114_at 1450858_a_at 1450859_s_at 1455479_a_at 1455480_s_at59340.9950.0123No
60MAPK11419568_at 1426585_s_at 1442876_at 1453104_at63260.939-0.0038No
61PRKCZ1418085_at 1449692_at 1454902_at65480.906-0.0120No
62PAWR1444808_at 1445390_at69920.841-0.0307No
63APP1420621_a_at 1427442_a_at 1438373_at 1438374_x_at 1444705_at 1447347_at 1458525_at70280.836-0.0305No
64BAG41418707_at 1439024_at 1449186_at71960.813-0.0365No
65MAP2K71421416_at 1425393_a_at 1425512_at 1425513_at 1440442_at 1451736_a_at 1457182_at73590.793-0.0423No
66CAV11449145_a_at76590.754-0.0544No
67IL31450566_at76970.750-0.0545No
68BAD1416582_a_at 1416583_at80470.703-0.0691No
69RAC11423734_at 1437674_at 1451086_s_at80620.701-0.0683No
70MEF2C1421027_a_at 1421028_a_at 1424852_at 1439946_at 1445420_at 1446484_at 1451506_at 1451507_at 1458551_at84190.655-0.0833No
71TNFRSF1B1418099_at 1448951_at88380.606-0.1013No
72MAPK141416703_at 1416704_at 1426104_at 1442364_at 1451927_a_at 1459617_at90380.581-0.1092No
73LIMK11417627_a_at 1425836_a_at 1456234_at 1458989_at93250.548-0.1212No
74CASP81424552_at94640.532-0.1265No
75TBX211449361_at95370.523-0.1287No
76CASP11449265_at96830.506-0.1343No
77YWHAZ1416102_at 1416103_at 1436971_x_at 1436981_a_at 1439005_x_at 1443893_at 1448218_s_at 1448219_a_at98680.485-0.1417No
78CYLD1429617_at 1429618_at 1445213_at103650.433-0.1637No
79ETV11422607_at 1445314_at 1450684_at103740.431-0.1631No
80IL41449864_at104960.418-0.1678No
81TH1420546_at105070.417-0.1674No
82AKAP51447301_at110010.361-0.1894No
83CSF21427429_at111470.346-0.1953No
84LMNA1421654_a_at 1425472_a_at 1426868_x_at 1452212_at 1457670_s_at111490.346-0.1946No
85RPS6KA51431050_at 1437625_at 1439004_at 1440343_at112300.336-0.1976No
86RIPK21421236_at 1450173_at113190.326-0.2010No
87CASP41449591_at113490.323-0.2016No
88NRK1436399_s_at 1450078_at 1450079_at114890.304-0.2074No
89EGF1418093_a_at115310.301-0.2086No
90SYK1418261_at 1418262_at 1425797_a_at 1457239_at116460.289-0.2133No
91TNF1419607_at117710.274-0.2184No
92MAP2K21415974_at 1443436_at 1460636_at121220.239-0.2340No
93YWHAQ1420828_s_at 1420829_a_at 1420830_x_at 1432842_s_at 1437608_x_at 1454378_at 1460590_s_at 1460621_x_at123380.217-0.2435No
94PDGFA1418711_at 1449187_at125130.198-0.2511No
95SRC1423240_at 1450918_s_at126340.185-0.2562No
96MAP2K31425456_a_at 1451714_a_at126510.183-0.2566No
97CFL21418066_at 1418067_at 1431432_at132110.117-0.2821No
98MAPK81420931_at 1420932_at 1437045_at 1440856_at 1457936_at132260.116-0.2825No
99JUN1417409_at 1448694_at132650.110-0.2840No
100PPARGC1A1434099_at 1434100_x_at 1437751_at 1456395_at 1460336_at132780.108-0.2843No
101PTGS21417262_at 1417263_at134350.089-0.2913No
102PLA2G4A1448558_a_at135250.078-0.2953No
103DIABLO1417683_at 1425768_at135920.070-0.2982No
104MAP3K31426686_s_at 1426687_at 1436522_at137200.051-0.3039No
105CDC25B1421963_a_at138190.038-0.3083No
106YES11418470_at 1449090_a_at 1456843_at 1458878_at140750.006-0.3201No
107ESR11421244_at 1435663_at 1457877_at 1460591_at14124-0.002-0.3223No
108PAK31417923_at 1417924_at 1437318_at14191-0.013-0.3253No
109SFN1448612_at14234-0.019-0.3272No
110PTPRK1423277_at 1423278_at 1431680_a_at 1441276_at 1441277_s_at 1441644_at 1443491_at 1443699_at 1444763_at14337-0.034-0.3318No
111TRAF61421376_at 1421377_at 1435350_at 1443288_at 1446940_at 1446977_at14353-0.036-0.3325No
112PIK3CA1423144_at 1429434_at 1429435_x_at 1440054_at 1453134_at 1460326_at14972-0.133-0.3607No
113PRKCE1437860_at 1437861_s_at 1442609_at 1444649_at 1449956_at 1452878_at15005-0.138-0.3618No
114GZMB1419060_at15022-0.141-0.3623No
115ATM1421205_at 1428830_at15042-0.145-0.3629No
116PIK3R11425514_at 1425515_at 1438682_at 1444591_at 1451737_at15248-0.177-0.3719No
117MAP4K51427083_a_at 1427084_a_at 1427376_a_at 1440059_at 1445426_at 1446348_at 1447204_at15348-0.195-0.3761No
118MAPK111421925_at 1421926_at15750-0.271-0.3940No
119PIM11423006_at 1435458_at15787-0.279-0.3951No
120PRKCA1427562_a_at 1443069_at 1445028_at 1445395_at 1446598_at 1450945_at15983-0.319-0.4034No
121FKBP1A1416036_at 1438795_x_at 1438958_x_at 1448184_at 1456196_x_at16008-0.325-0.4038No
122MAP4K31444406_at16035-0.333-0.4043No
123NUMA11423974_at 1423975_s_at 1441090_at 1444576_at 1444577_x_at16121-0.352-0.4074No
124IRF41421173_at 1421174_at16277-0.392-0.4138No
125ACTA11427735_a_at16285-0.393-0.4132No
126TRADD1429117_at 1439910_a_at 1452622_a_at16354-0.409-0.4155No
127CD40LG1422283_at16403-0.421-0.4168No
128REL1420710_at16635-0.480-0.4264No
129KSR11419823_s_at 1442581_at 1450114_at16664-0.486-0.4267No
130TNIK1443802_at16674-0.490-0.4261No
131HCK1446553_at 1449455_at16712-0.502-0.4267No
132NFATC11417621_at 1425761_a_at 1428479_at 1447084_at 1447085_s_at16786-0.526-0.4290No
133PRKACA1447720_x_at 1450519_a_at16824-0.536-0.4295No
134MAP2K11416351_at16935-0.572-0.4334No
135SMPD21416999_at17040-0.607-0.4369No
136FOXP31420765_a_at 1457082_at17059-0.612-0.4364No
137PTPN11417068_a_at 1438670_at17061-0.612-0.4352No
138FASLG1418803_a_at 1449235_at17094-0.623-0.4353No
139IKBKB1426207_at 1426333_a_at 1432275_at 1445141_at 1454184_a_at17210-0.664-0.4392No
140CREB11421582_a_at 1421583_at 1423402_at 1428755_at 1452529_a_at 1452901_at17226-0.671-0.4385No
141RAF11416078_s_at 1425419_a_at17235-0.675-0.4374No
142DUSP161418401_a_at 1440615_at 1440651_at17261-0.683-0.4371No
143ERC11421501_a_at 1424247_at 1441493_at 1444356_at 1451279_at17322-0.702-0.4384No
144EIF4E1450909_at 1457489_at 1459371_at17356-0.717-0.4384No
145FBXW111425461_at 1425462_at 1437468_x_at 1438336_at 1443010_at 1447294_at 1457485_at17437-0.752-0.4404No
146CALM11417365_a_at 1417366_s_at 1433592_at 1454611_a_at 1455571_x_at17505-0.779-0.4419No
147POU2F11419716_a_at 1427695_a_at 1427835_at17578-0.808-0.4435No
148MITF1422025_at 1455214_at17602-0.821-0.4428No
149TSC21452105_a_at17608-0.823-0.4413No
150MAP4K41422615_at 1440609_at 1448050_s_at 1459912_at17705-0.864-0.4439No
151MAP2K41426233_at 1442679_at 1451982_at17730-0.871-0.4431No
152GNB2L11440120_at 1455168_a_at17778-0.893-0.4434No
153MAPK91421876_at 1421877_at 1421878_at17782-0.895-0.4416No
154CHUK1417091_at 1428210_s_at 1451383_a_at17804-0.903-0.4406No
155CSNK1A11424827_a_at 1428537_at 1430529_at 1451497_at 1456216_at17814-0.908-0.4391No
156ARRB21426239_s_at 1451987_at17849-0.929-0.4387No
157MEF2D1421388_at 1434487_at 1436642_x_at 1437300_at 1458901_at17877-0.936-0.4380No
158MAP2K61426850_a_at 1459292_at17943-0.963-0.4389No
159NFKBIA1420088_at 1420089_at 1438157_s_at 1448306_at 1449731_s_at18087-1.008-0.4434No
160CAMK41421941_at 1426167_a_at 1439843_at 1442822_at 1452572_at18098-1.010-0.4417No
161FKBP81416113_at18186-1.035-0.4435No
162MAPKAPK51417016_at 1439828_at18426-1.132-0.4521Yes
163SPHK21417431_a_at 1426230_at18428-1.132-0.4497Yes
164SATB11416007_at 1416008_at 1439203_at 1439449_at 1443284_at 1456902_at18496-1.168-0.4503Yes
165ATF61435444_at 1453288_at 1456021_at18499-1.169-0.4479Yes
166NUP2141434351_at 1456503_at 1457815_at18505-1.172-0.4457Yes
167NSMAF1416412_at18546-1.191-0.4450Yes
168NFKB21425902_a_at 1429128_x_at18571-1.202-0.4435Yes
169RAB5A1416426_at 1446129_at18602-1.214-0.4423Yes
170MAP3K81419208_at18698-1.260-0.4440Yes
171GSN1415812_at 1436991_x_at 1437171_x_at 1441225_at 1456312_x_at 1456568_at 1456569_x_at18739-1.283-0.4431Yes
172HSPB11422943_a_at 1425964_x_at 1427853_a_at 1427854_x_at 1453914_at18931-1.393-0.4490Yes
173SMPD11447874_x_at 1448621_a_at18960-1.412-0.4473Yes
174RFFL1431748_a_at 1434432_at18974-1.420-0.4448Yes
175CASP21448165_at19011-1.437-0.4434Yes
176FADD1416888_at 1446499_at19039-1.457-0.4416Yes
177ADAM171421857_at 1421858_at 1421859_at 1445500_at19040-1.457-0.4385Yes
178LCK1425396_a_at 1439145_at 1439146_s_at 1457917_at19071-1.481-0.4367Yes
179DUSP101417163_at 1417164_at19106-1.503-0.4351Yes
180RALB1417744_a_at 1435517_x_at19134-1.522-0.4331Yes
181SRF1418255_s_at 1418256_at19149-1.533-0.4305Yes
182SLC9A11417397_at19217-1.578-0.4302Yes
183CCM21434648_a_at 1434649_at 1456290_x_at 1457339_at19347-1.662-0.4326Yes
184MAPK31427060_at19380-1.691-0.4305Yes
185IL51425546_a_at 1442049_at 1450550_at19394-1.700-0.4275Yes
186MAP3K121417115_at 1438908_at 1456565_s_at19465-1.743-0.4270Yes
187PRKCH1422079_at 1434248_at19474-1.756-0.4236Yes
188NFATC21425901_at 1425990_a_at 1426031_a_at 1426032_at 1439205_at 1440426_at19581-1.851-0.4246Yes
189IKBKG1421208_at 1421209_s_at 1435646_at 1435647_at 1450161_at 1454690_at19699-1.951-0.4258Yes
190YWHAE1426384_a_at 1426385_x_at 1435702_s_at 1438839_a_at 1440841_at 1457173_at19732-1.981-0.4231Yes
191PAK11420979_at 1420980_at 1450070_s_at 1459029_at19738-1.986-0.4191Yes
192BCL101418970_a_at 1418971_x_at 1418972_at 1443524_x_at19756-1.997-0.4156Yes
193DFFA1450885_at 1457564_at19788-2.011-0.4128Yes
194TOP11423474_at 1438495_at 1457573_at 1459672_at19804-2.024-0.4091Yes
195HBP11432143_a_at 1438430_at 1446269_at 1460367_at19815-2.032-0.4053Yes
196RALA1423137_at 1450870_at 1456049_at19898-2.087-0.4046Yes
197GAS21429147_at 1435834_at 1438564_at 1450112_a_at19912-2.096-0.4007Yes
198ATF21426582_at 1426583_at 1427559_a_at 1437777_at 1452116_s_at 1459237_at19925-2.103-0.3968Yes
199CBLB1437304_at 1455082_at 1458469_at19947-2.123-0.3933Yes
200MAPKAPK31434815_a_at 1437494_at19978-2.157-0.3901Yes
201YWHAH1416004_at20026-2.200-0.3876Yes
202CTSD1448118_a_at20037-2.213-0.3833Yes
203SREBF11426690_a_at20071-2.242-0.3801Yes
204ITCH1415769_at 1431316_at 1459332_at20078-2.248-0.3755Yes
205APAF11450223_at20146-2.309-0.3737Yes
206CTLA41419334_at20241-2.409-0.3729Yes
207NFKB11427705_a_at 1442949_at20346-2.528-0.3723Yes
208BCL31418133_at20382-2.577-0.3685Yes
209DDIT31417516_at 1443897_at20440-2.645-0.3655Yes
210TRAF21451233_at20539-2.786-0.3641Yes
211CASP91426125_a_at 1437537_at 1457816_at20601-2.861-0.3608Yes
212GATA31448886_at20751-3.097-0.3611Yes
213CASP61415995_at 1458715_at20790-3.169-0.3561Yes
214RELA1419536_a_at20799-3.184-0.3497Yes
215MAP3K7IP21423462_at 1451003_at20887-3.362-0.3465Yes
216PRF11451862_a_at20927-3.438-0.3410Yes
217PAK21434250_at 1454887_at20929-3.442-0.3337Yes
218FOS1423100_at20955-3.496-0.3274Yes
219EP3001434765_at20959-3.504-0.3201Yes
220BIRC21418854_at21087-3.757-0.3180Yes
221TNFAIP31433699_at 1450829_at21180-3.976-0.3137Yes
222ARHGDIB1426454_at21185-3.986-0.3054Yes
223CREBBP1434633_at 1435224_at 1436983_at 1444856_at 1457641_at 1459804_at21224-4.102-0.2985Yes
224BCL21422938_at 1427818_at 1437122_at 1440770_at 1443837_x_at 1457687_at21309-4.363-0.2930Yes
225RELB1417856_at21351-4.570-0.2852Yes
226PRKCQ1426044_a_at21404-4.723-0.2775Yes
227DUSP11448830_at21461-4.952-0.2696Yes
228MADD1425735_at 1455502_at21500-5.159-0.2604Yes
229JUNB1415899_at21503-5.184-0.2494Yes
230NR4A11416505_at21561-5.542-0.2403Yes
231MAP3K11424850_at21563-5.558-0.2285Yes
232GDI11447613_at 1451070_at21575-5.645-0.2170Yes
233TNFRSF1A1417291_at21597-5.736-0.2057Yes
234NFATC31419976_s_at 1452497_a_at21671-6.290-0.1957Yes
235MAP4K21428297_at 1434833_at 1450244_a_at21678-6.348-0.1825Yes
236STAT11420915_at 1440481_at 1450033_a_at 1450034_at21734-6.804-0.1705Yes
237PRKCD1422847_a_at 1442256_at21741-6.917-0.1561Yes
238DGKA1418578_at21744-6.953-0.1414Yes
239CASP71426062_a_at 1448659_at21786-7.283-0.1277Yes
240CSNK2A11419034_at 1419035_s_at 1419036_at 1419037_at 1419038_a_at 1453427_at21816-7.560-0.1130Yes
241LSP11417756_a_at21836-7.735-0.0974Yes
242PTK21423059_at 1430827_a_at 1439198_at 1440082_at 1441475_at 1443384_at 1445137_at21846-7.797-0.0812Yes
243EGR11417065_at21860-7.832-0.0651Yes
244GSK3B1434439_at 1437001_at 1439931_at 1439949_at 1451020_at 1454958_at21861-7.833-0.0485Yes
245BIRC31421392_a_at 1425223_at21886-7.963-0.0326Yes
246EGR21427682_a_at 1427683_at21904-8.113-0.0161Yes
247EGR31421486_at 1436329_at21913-8.2580.0011Yes
Table: GSEA details [plain text format]



Fig 2: NCI_TNF RECEPTOR SIGNALING PATHWAY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: NCI_TNF RECEPTOR SIGNALING PATHWAY: Random ES distribution   
Gene set null distribution of ES for NCI_TNF RECEPTOR SIGNALING PATHWAY